ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6ikmE1 - ECOD Domain | ECOD

ECOD/Domains/e6ikmE1

e6ikmE1

UID: 002561106

PDB

Range: E:28-132,E:272-362
PDB: 6IKM chain E(all domains)
UniProt: A0A069QID4 (all domains)
Gene: spuE

Molecule: Polyamine transport protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in SBP_bac_8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_8(7523.1.1.28)

Ligands

in contact, ≤ 4 Å

SpermidineSPD
drugDrugBank DB03566

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF13416SBP_bac_8

Bacterial extracellular solute-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 6IKM RCSB PDB: 6IKM PDBe: 6IKM UniProt: A0A069QID4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.