ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ikmH1 - ECOD Domain | ECOD

ECOD/Domains/e6ikmH1

e6ikmH1

UID: 002561112

PDB

Range: H:28-132,H:272-362
PDB: 6IKM chain H(all domains)
UniProt: A0A069QID4 (all domains)
Gene: spuE

Molecule: Polyamine transport protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_8(7523.1.1.28)

Ligands

in contact, ≤ 4 Å

SpermidineSPD
drugDrugBank DB03566

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF13416SBP_bac_8

Bacterial extracellular solute-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 6IKM RCSB PDB: 6IKM PDBe: 6IKM UniProt: A0A069QID4

Downloads

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Drug annotations from DrugDomain.