ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5qiqA1 - ECOD Domain | ECOD

ECOD/Domains/e5qiqA1

e5qiqA1

UID: 002562119

PDB

Range: A:6-230
PDB: 5QIQ chain A(all domains)
UniProt: Q96DC9 (all domains)
Gene: OTUB2

Molecule: Ubiquitin thioesterase OTUB2

3D Structure

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Related Domains

Browse other domains in Peptidase_C65 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C65(219.1.1.48)

Ligands

in contact, ≤ 4 Å

N-[(4-bromothiophen-2-yl)methyl]acetamideJ5A

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF10275Peptidase_C65

Peptidase C65 Otubain

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 5QIQ RCSB PDB: 5QIQ PDBe: 5QIQ UniProt: Q96DC9

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.