ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6jd8A1 - ECOD Domain | ECOD

ECOD/Domains/e6jd8A1

e6jd8A1

UID: 002576251

PDB

Range: A:97-316
PDB: 6JD8 chain A(all domains)
UniProt: P07711 (all domains)
Gene: CTSL

Molecule: Cathepsin L1

3D Structure

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Related Domains

Browse other domains in Peptidase_C1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C1(219.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 5 additives (Ethanol, Glycerin, Triethylene glycol, …)

EthanolEOH
DrugBank DB00898
GlycerinGOL
DrugBank DB09462
Triethylene glycol

Pfam Families

PF00112Peptidase_C1

Papain family cysteine protease

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 6JD8 RCSB PDB: 6JD8 PDBe: 6JD8 UniProt: P07711

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02327

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.