ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rm9A3 - ECOD Domain | ECOD

ECOD/Domains/e6rm9A3

e6rm9A3

UID: 002578251

PDB

Range: A:651-833
PDB: 6RM9 chain A(all domains)
UniProt: G0SEG4 (all domains)
Gene: CTHT_0063660

Molecule: Putative mRNA splicing factor

3D Structure

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Related Domains

Browse other domains in HA2_N,HA2_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupSec63 N-terminal subdomain-like(4156)

HH-groupSec63 N-terminal subdomain-like(4156.1)

TT-groupSec63 N-terminal subdomain-like(4156.1.1)

FFamilyHA2_N,HA2_C(4156.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetate, Glycerin, DI(HYDROXYETHYL)ETHER)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHER

Pfam Families

PF04408WHD_HA2

Helicase associated domain (HA2), winged-helix

ClanCL0123HTH

Helicase associated domain (HA2), ratchet-like

External Links

ECOD PDB View: 6RM9 RCSB PDB: 6RM9 PDBe: 6RM9 UniProt: G0SEG4

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.