ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6i7sG2 - ECOD Domain | ECOD

ECOD/Domains/e6i7sG2

e6i7sG2

UID: 002581370

PDB

Range: G:300-610
PDB: 6I7S chain G(all domains)
UniProt: P55157 (all domains)
Gene: MTTP

Molecule: Microsomal triglyceride transfer protein large subunit

3D Structure

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Related Domains

Browse other domains in Vitellogenin_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyVitellogenin_N(109.4.1.19)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Triethylene glycol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, …)

Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF01347TPR_Vitellogenin

Vitellogenin TPR domain

ClanCL0020TPR

External Links

ECOD PDB View: 6I7S RCSB PDB: 6I7S PDBe: 6I7S UniProt: P55157

Downloads

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Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.