ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6sxrA1 - ECOD Domain | ECOD

ECOD/Domains/e6sxrA1

e6sxrA1

UID: 002583843

PDB

Range: A:338-498
PDB: 6SXR chain A(all domains)
UniProt: Q8NK89 (all domains)
Gene: abfB

Molecule: Alpha-L-arabinofuranosidase B

3D Structure

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Related Domains

Browse other domains in AbfB →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-Trefoil(6)

HH-groupbeta-Trefoil(6.1)

TT-groupbeta-Trefoil(6.1.1)

FFamilyAbfB(6.1.1.8)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
4-nitrophenyl alpha-L-arabinofuranosideKHP

+ 5 additives (Acetate, Triethylene glycol, Sulfate ion, …)

AcetateACT

Pfam Families

Alpha-L-arabinofuranosidase B (ABFB) domain

ClanCL0066Trefoil

External Links

ECOD PDB View: 6SXR RCSB PDB: 6SXR PDBe: 6SXR UniProt: Q8NK89

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Triethylene glycolPGE

DrugBank DB02327

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.