ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xjcC3 - ECOD Domain | ECOD

ECOD/Domains/e5xjcC3

e5xjcC3

UID: 002589225

PDB

Range: C:56-439
PDB: 5XJC chain C(all domains)
UniProt: Q15029 (all domains)
Gene: EFTUD2

Molecule: 116 kDa U5 small nuclear ribonucleoprotein component

3D Structure

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Related Domains

Browse other domains in GTP_EFTU,EFTUD2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyGTP_EFTU,EFTUD2(2004.1.1.15)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00009GTP_EFTU

Elongation factor Tu GTP binding domain

ClanCL0023P-loop_NTPase

116 kDa U5 small nuclear ribonucleoprotein component N-terminus

External Links

ECOD PDB View: 5XJC RCSB PDB: 5XJC PDBe: 5XJC UniProt: Q15029

Downloads

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