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PDB 5XJC

ELECTRON MICROSCOPY50 chains74 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aSmall nuclear ribonucleoprotein Sm D3view chain
1 domain
Chain bSmall nuclear ribonucleoprotein-associated proteins B and B'view chain
1 domain
Chain cSmall nuclear ribonucleoprotein Sm D1view chain
1 domain
Chain C116 kDa U5 small nuclear ribonucleoprotein componentview chain
5 domains
Chain dSmall nuclear ribonucleoprotein Sm D2view chain
1 domain
Chain eSmall nuclear ribonucleoprotein Eview chain
1 domain
Chain EU5 small nuclear ribonucleoprotein 40 kDa proteinview chain
1 domain
Chain fSmall nuclear ribonucleoprotein Fview chain
1 domain
Chain gSmall nuclear ribonucleoprotein Gview chain
1 domain
Chain hSmall nuclear ribonucleoprotein Sm D3view chain
1 domain
Chain iSmall nuclear ribonucleoprotein-associated proteins B and B'view chain
1 domain
Chain IPre-mRNA-splicing factor SYF1view chain
1 domain
Chain jSmall nuclear ribonucleoprotein Sm D1view chain
1 domain
Chain JCrooked neck-like protein 1view chain
1 domain
Chain kSmall nuclear ribonucleoprotein Sm D2view chain
1 domain
Chain lSmall nuclear ribonucleoprotein Eview chain
1 domain
Chain LCell division cycle 5-like proteinview chain
2 domains
Chain mSmall nuclear ribonucleoprotein Fview chain
1 domain
Chain nSmall nuclear ribonucleoprotein Gview chain
1 domain
Chain NProtein BUD31 homologview chain
1 domain
Chain oU2 small nuclear ribonucleoprotein A'view chain
1 domain
Chain OPre-mRNA-splicing factor RBM22view chain
3 domains
Chain pU2 small nuclear ribonucleoprotein B''view chain
1 domain
Chain qPre-mRNA-processing factor 19view chain
1 domain
Chain rPre-mRNA-processing factor 19view chain
1 domain
Chain sPre-mRNA-processing factor 19view chain
1 domain
Chain SPeptidyl-prolyl cis-trans isomerase-like 1view chain
1 domain
Chain tPre-mRNA-processing factor 19view chain
1 domain
Chain TPleiotropic regulator 1view chain
1 domain
Chain uEukaryotic initiation factor 4A-IIIview chain
2 domains
Chain vProtein mago nashi homolog 2view chain
1 domain
Chain VPre-mRNA-splicing factor CWC22 homologview chain
2 domains
Chain wRNA-binding protein 8Aview chain
1 domain
Chain WPre-mRNA-processing factor 17view chain
1 domain
Chain ZPre-mRNA-splicing factor SLU7view chain
2 domains

All Domains (74)

#ChainDomain IDRangeFamilyClassification
1ae5xjca1a:3-85LSM4 → 4.1 → 4.1.1
2Ae5xjcA1A:2067-2314JAB,PROCT2492 → 2492.1 → 2492.1.1
3Ae5xjcA2A:25-810PRO8NT,PROCN1038 → 1038.1 → 1038.1.1
4Ae5xjcA3A:1755-2015PRP8_domainIV2484 → 2484.1 → 2484.1.1
5Ae5xjcA4A:1183-1502U6-snRNA_bdg,U5_2-snRNA_bdg4967 → 4967.1 → 4967.1.1
6Ae5xjcA5A:811-1182RRM_4304 → 304.48 → 304.48.1
7Ae5xjcA6A:1503-1754U6-snRNA_bdg2008 → 2008.1 → 2008.1.1
8be5xjcb1b:4-89LSM4 → 4.1 → 4.1.1
9ce5xjcc1c:1-82LSM4 → 4.1 → 4.1.1
10Ce5xjcC1C:660-828EFG_IV212 → 212.1 → 212.1.1
11Ce5xjcC2C:829-943EFG_C304 → 304.24 → 304.24.1
12Ce5xjcC3C:56-439GTP_EFTU,EFTUD22004 → 2004.1 → 2004.1.1
13Ce5xjcC4C:440-580GTP_EFTU_D21 → 1.1 → 1.1.7
14Ce5xjcC5C:581-659EFG_III304 → 304.24 → 304.24.1
15de5xjcd1d:20-116LSM4 → 4.1 → 4.1.1
16De5xjcD1D:1312-1520DEAD2004 → 2004.1 → 2004.1.1
17De5xjcD2D:1958-2015102.5.1.0102 → 102.5 → 102.5.1
18De5xjcD3D:1181-1311Sec6311 → 11.1 → 11.1.1
19De5xjcD4D:1825-1957Sec634156 → 4156.1 → 4156.1.1
20De5xjcD5D:1126-1180102.5.1.0102 → 102.5 → 102.5.1
21De5xjcD6D:1521-1722Helicase_C2004 → 2004.1 → 2004.1.1
22De5xjcD7D:994-1125Sec634156 → 4156.1 → 4156.1.1
23De5xjcD8D:2016-2125Sec6311 → 11.1 → 11.1.1
24De5xjcD9D:1723-1824SNRNP200_wHTH101 → 101.1 → 101.1.2
25De5xjcD10D:887-993SNRNP200_wHTH101 → 101.1 → 101.1.2
26De5xjcD11D:683-886Helicase_C2004 → 2004.1 → 2004.1.1
27De5xjcD12D:404-682DEAD2004 → 2004.1 → 2004.1.1
28ee5xjce1e:14-92LSM4 → 4.1 → 4.1.1
29Ee5xjcE1E:58-356WD40, Beta-prop_NOL10_N5 → 5.1 → 5.1.4
30fe5xjcf1f:2-75LSM4 → 4.1 → 4.1.1
31ge5xjcg1g:3-76LSM4 → 4.1 → 4.1.1
32he5xjch1h:3-85LSM4 → 4.1 → 4.1.1
33ie5xjci1i:4-89LSM4 → 4.1 → 4.1.1
34Ie5xjcI1I:156-738,I:740-819TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C109 → 109.4 → 109.4.1
35je5xjcj1j:1-82LSM4 → 4.1 → 4.1.1
36Je5xjcJ1J:214-802HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PRP6_TPR109 → 109.4 → 109.4.1
37ke5xjck1k:20-116LSM4 → 4.1 → 4.1.1
38le5xjcl1l:14-92LSM4 → 4.1 → 4.1.1
39Le5xjcL1L:8-64Myb_DNA-binding101 → 101.1 → 101.1.1
40Le5xjcL2L:62-110Myb_DNA-binding101 → 101.1 → 101.1.1
41me5xjcm1m:2-75LSM4 → 4.1 → 4.1.1
42ne5xjcn1n:3-76LSM4 → 4.1 → 4.1.1
43Ne5xjcN1N:1-143BUD313952 → 3952.1 → 3952.1.1
44oe5xjco1o:2-163LRR_9207 → 207.1 → 207.1.1
45Oe5xjcO1O:221-303RRM_1304 → 304.9 → 304.9.1
46Oe5xjcO2O:19-89STL11_N376 → 376.1 → 376.1.3
47Oe5xjcO3O:90-220zf-CCCH_RBM22906 → 906.1 → 906.1.1
48pe5xjcp1p:3-96RRM_1304 → 304.9 → 304.9.1
49qe5xjcq1q:68-134,q:195-504WD40, Prp19, WD40_Prp195 → 5.1 → 5.1.4
50Qe5xjcQ1Q:493-659Aquarius_N_2nd1 → 1.1 → 1.1.7
51Qe5xjcQ2Q:416-492,Q:660-706,Q:795-1134ResIII, AAA_112004 → 2004.1 → 2004.1.1
52Qe5xjcQ3Q:19-415Aquarius_N_1st109 → 109.4 → 109.4.1
53Qe5xjcQ4Q:707-753,Q:773-794Aquarius_N_3rd3940 → 3940.1 → 3940.1.1
54Qe5xjcQ5Q:1135-1381AAA_122004 → 2004.1 → 2004.1.1
55re5xjcr1r:68-134,r:195-504WD40, Prp19, WD40_Prp195 → 5.1 → 5.1.4
56se5xjcs1s:68-134,s:195-504WD40, Prp19, WD40_Prp195 → 5.1 → 5.1.4
57Se5xjcS1S:8-166Pro_isomerase75 → 75.1 → 75.1.1
58te5xjct1t:68-134,t:195-504WD40, Prp19, WD40_Prp195 → 5.1 → 5.1.4
59Te5xjcT1T:184-496WD405 → 5.1 → 5.1.4
60ue5xjcu1u:243-411Helicase_C2004 → 2004.1 → 2004.1.1
61ue5xjcu2u:22-242DEAD2004 → 2004.1 → 2004.1.1
62ve5xjcv1v:5-148Mago_nashi861 → 861.1 → 861.1.1
63Ve5xjcV1V:448-648MA3109 → 109.4 → 109.4.1
64Ve5xjcV2V:149-406MIF4G109 → 109.4 → 109.4.1
65we5xjcw1w:64-154RRM_1304 → 304.9 → 304.9.1
66We5xjcW1W:83-578WD405 → 5.1 → 5.1.4
67Ye5xjcY01Y:260-355,Y:609-610,Y:800-805S12 → 2.1 → 2.1.1
68Ye5xjcY02Y:566-608,Y:611-743DEAD2004 → 2004.1 → 2004.1.1
69Ye5xjcY03Y:744-799,Y:806-911,Y:914-917Helicase_C2004 → 2004.1 → 2004.1.1
70Ye5xjcY04Y:912-913,Y:918-975,Y:977-987HA2_N101 → 101.1 → 101.1.2
71Ye5xjcY05Y:961-1108HA2_N,HA2_C4156 → 4156.1 → 4156.1.1
72Ye5xjcY06Y:1109-1183OB_NTP_bind2 → 2.1 → 2.1.1
73Ze5xjcZ1Z:62-196SLU7_N396 → 396.3 → 396.3.1
74Ze5xjcZ2Z:265-371Slu77101 → 7101.1 → 7101.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors