ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6w01A2 - ECOD Domain | ECOD

ECOD/Domains/e6w01A2

e6w01A2

UID: 002595277

PDB

Range: A:191-347
PDB: 6W01 chain A(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Uridylate-specific endoribonuclease

3D Structure

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Related Domains

Browse other domains in CoV_NSP15_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupRNase A-like(372)

HH-groupEndoU-like(372.2)

TT-groupEndoU-like(372.2.1)

FFamilyCoV_NSP15_C(372.2.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Citric acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Citric acidCIT
DrugBank DB04272
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF19215CoV_NSP15_C

Coronavirus replicase NSP15, uridylate-specific endoribonuclease

ClanCL0695EndoU

External Links

ECOD PDB View: 6W01 RCSB PDB: 6W01 PDBe: 6W01 UniProt: P0DTD1

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.