ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6w1dB1 - ECOD Domain | ECOD

ECOD/Domains/e6w1dB1

e6w1dB1

UID: 002597179

PDB

Range: B:2-85
PDB: 6W1D chain B(all domains)
UniProt: Q9HD34 (all domains)
Gene: LYRM4

Molecule: LYR motif-containing protein 4

3D Structure

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Related Domains

Browse other domains in Complex1_LYR →

Classification

AArchitecturealpha bundles(a.7)

XX-groupLYR protein(1128)

HH-groupLYR protein(1128.1)

TT-groupLYR protein(1128.1.1)

FFamilyComplex1_LYR(1128.1.1.1)

Ligands

in contact, ≤ 4 Å

Edetic acidEDT
drugDrugBank DB00974
S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate8Q1

+ 5 additives (2-(N-morpholino)ethanesulfonic acid, 1,2-ETHANEDIOL, Glycerol, …)

Pfam Families

PF05347Complex1_LYR

Complex 1 protein (LYR family)

ClanCL0491LYR-like

External Links

ECOD PDB View: 6W1D RCSB PDB: 6W1D PDBe: 6W1D UniProt: Q9HD34

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-(N-morpholino)ethanesulfonic acidMES

DrugBank DB03814

1,2-ETHANEDIOLEDO

GlycerolGOL

DI(HYDROXYETHYL)ETHERPEG

Triethylene glycolPGE

Shown in the structure viewer. Drug annotations from DrugDomain.