ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6sczA2 - ECOD Domain | ECOD

ECOD/Domains/e6sczA2

e6sczA2

UID: 002605035

PDB

Range: A:252-383
PDB: 6SCZ chain A(all domains)
UniProt: P9WQA9 (all domains)
Gene: alr

Molecule: Alanine racemase

3D Structure

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Related Domains

Browse other domains in Ala_racemase_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyAla_racemase_C(1.1.7.6)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene-[(4~{R})-3-oxidanylidene-1,2-oxazolidin-4-yl]azaniumL7N

Pfam Families

PF00842Ala_racemase_C

Alanine racemase, C-terminal domain

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 6SCZ RCSB PDB: 6SCZ PDBe: 6SCZ UniProt: P9WQA9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methyl-(3-oxidanyl-1,2-oxazol-4-yl)azaniumOJQ

polyethylene glycolP4K

+ 4 additives (Glycerin, Tromethamine, 1,2-ETHANEDIOL, …)

GlycerinGOL
DrugBank DB09462
TromethamineTRS
DrugBank DB03754
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.