ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4q39B2 - ECOD Domain | ECOD

ECOD/Domains/e4q39B2

e4q39B2

UID: 002617907

PDB

Range: B:1-121
PDB: 4Q39 chain B(all domains)
UniProt: Q46E80 (all domains)
Gene: pylD

Molecule: PYLD, pyrrolysine synthase

3D Structure

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Related Domains

Browse other domains in PylD_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupClass I glutamine amidotransferase-like(2007.1.1)

FFamilyPylD_N(2007.1.1.21)

Ligands

in contact, ≤ 4 Å

NADHNAI
drugDrugBank DB00157
PyrrolysinePYL

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOL

Pfam Families

Pyrrolysine biosynthesis protein PylD, N-terminal domain

ClanCL0014Glutaminase_I

External Links

ECOD PDB View: 4Q39 RCSB PDB: 4Q39 PDBe: 4Q39 UniProt: Q46E80

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.