ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5rdfA2 - ECOD Domain | ECOD

ECOD/Domains/e5rdfA2

e5rdfA2

UID: 002633583

PDB

Range: A:179-330
PDB: 5RDF chain A(all domains)
UniProt: P11838 (all domains)
Gene: EAPA

Molecule: Endothiapepsin

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 5 additives (Acetate, Glycerin, Triethylene glycol, …)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462
Triethylene glycol

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5RDF RCSB PDB: 5RDF PDBe: 5RDF UniProt: P11838

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02327

DI(HYDROXYETHYL)ETHERPEG

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.