ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6w5fB2 - ECOD Domain | ECOD

ECOD/Domains/e6w5fB2

e6w5fB2

UID: 002637505

PDB

Range: B:94-194
PDB: 6W5F chain B(all domains)
UniProt: P54427 (all domains)
Gene: ybxI

Molecule: BSU-2delta mutant

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Malonate ion, DI(HYDROXYETHYL)ETHER)

Malonate ionMLI
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6W5F RCSB PDB: 6W5F PDBe: 6W5F UniProt: P54427

Downloads

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