ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6y66JJJ1 - ECOD Domain | ECOD

ECOD/Domains/e6y66JJJ1

e6y66JJJ1

UID: 002641187

PDB

Range: JJJ:19-286
PDB: 6Y66 chain JJJ(all domains)
UniProt: Q80FI3 (all domains)
Gene: VP1

Molecule: Capsid protein VP1

3D Structure

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Related Domains

Browse other domains in Polyoma_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyPolyoma_coat(10.2.1.6)

Ligands

in contact, ≤ 4 Å

2-O-methyl-5-N-acetyl-alpha-D-neuraminic acidMNA

+ 2 additives (Imidazole, 1,2-ETHANEDIOL)

ImidazoleIMD
DrugBank DB03366
1,2-ETHANEDIOLEDO

Pfam Families

PF00718Polyoma_coat

Polyomavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6Y66 RCSB PDB: 6Y66 PDBe: 6Y66 UniProt: Q80FI3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.