ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6y4lB1 - ECOD Domain | ECOD

ECOD/Domains/e6y4lB1

e6y4lB1

UID: 002647855

PDB

Range: B:2-194
PDB: 6Y4L chain B(all domains)
UniProt: Q9Y3B6 (all domains)
Gene: EMC9

Molecule: ER membrane protein complex subunit 9

3D Structure

Loading viewer...

Related Domains

Browse other domains in UPF0172 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCytidine deaminase-like(2492)

HH-groupCytidine deaminase-like(2492.1)

TT-groupCytidine deaminase-like(2492.1.1)

FFamilyUPF0172(2492.1.1.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Sulfate ion, 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, …)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL

Pfam Families

PF03665UPF0172

Uncharacterised protein family (UPF0172)

ClanCL0366JAB

External Links

ECOD PDB View: 6Y4L RCSB PDB: 6Y4L PDBe: 6Y4L UniProt: Q9Y3B6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.