ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vdfA1 - ECOD Domain | ECOD

ECOD/Domains/e6vdfA1

e6vdfA1

UID: 002652998

PDB

Range: A:244-586
PDB: 6VDF chain A(all domains)
UniProt: P40709 (all domains)
Gene: pbgA

Molecule: Periplasmic domain of the cardiolipin transporter protein YejM/PbgA

3D Structure

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Related Domains

Browse other domains in Sulfatase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupAlkaline phosphatase-like(7515)

HH-groupAlkaline phosphatase-like(7515.1)

TT-groupAlkaline phosphatase-like(7515.1.1)

FFamilySulfatase(7515.1.1.2)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

+ 3 additives (Triethylene glycol, Phosphate ion, DI(HYDROXYETHYL)ETHER)

Triethylene glycolPGE
DrugBank DB02327
Phosphate ion

Pfam Families

PF00884Sulfatase

Sulfatase

ClanCL0088Alk_phosphatase

External Links

ECOD PDB View: 6VDF RCSB PDB: 6VDF PDBe: 6VDF UniProt: P40709

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.