ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6y09B1 - ECOD Domain | ECOD

ECOD/Domains/e6y09B1

e6y09B1

UID: 002674288

PDB

Range: B:30-204
PDB: 6Y09 chain B(all domains)
UniProt: Q9H082 (all domains)
Gene: RAB33B

Molecule: Ras-related protein Rab-33B

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Magnesium ionMG
metal

+ 3 additives (Phosphate ion, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6Y09 RCSB PDB: 6Y09 PDBe: 6Y09 UniProt: Q9H082

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

DrugBank DB14523

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.