ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6x94A2 - ECOD Domain | ECOD

ECOD/Domains/e6x94A2

e6x94A2

UID: 002697345

PDB

Range: A:1-113
PDB: 6X94 chain A(all domains)
UniProt: Q8PYJ6 (all domains)
Gene: serS

Molecule: Serine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in Seryl_tRNA_N →

Classification

AArchitecturealpha bundles(a.7)

XX-groupLong alpha-hairpin(192)

HH-grouptRNA-binding arm(192.7)

TT-grouptRNA-binding arm(192.7.1)

FFamilySeryl_tRNA_N(192.7.1.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Potassium ionK
metal
Thiocyanate ionSCN

Pfam Families

PF02403Seryl_tRNA_N

Seryl-tRNA synthetase N-terminal domain

ClanCL0298tRNA_bind_arm

External Links

ECOD PDB View: 6X94 RCSB PDB: 6X94 PDBe: 6X94 UniProt: Q8PYJ6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Dimethyl sulfoxide, DI(HYDROXYETHYL)ETHER)

Dimethyl sulfoxideDMS
DrugBank DB01093
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.