ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7kbhB1 - ECOD Domain | ECOD

ECOD/Domains/e7kbhB1

e7kbhB1

UID: 002705732

PDB

Range: B:10-375
PDB: 7KBH chain B(all domains)
UniProt: Q92769 (all domains)
Gene: HDAC2

Molecule: Histone deacetylase 2

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
N-{(1S)-5-{[2-(methylsulfanyl)benzene-1-carbonyl]amino}-1-[5-(naphthalen-2-yl)-1H-imidazol-2-yl]pentyl}-1,3-thiazole-5-carboxamideWB4
Zinc ionZN

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 7KBH RCSB PDB: 7KBH PDBe: 7KBH UniProt: Q92769

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.