ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ldxA1 - ECOD Domain | ECOD

ECOD/Domains/e7ldxA1

e7ldxA1

UID: 002708816

PDB

Range: A:187-301
PDB: 7LDX chain A(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: 3C-like proteinase

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001)

HH-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1)

TT-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1.1)

FFamilyPeptidase_C30(6001.1.1.1)

Ligands

in contact, ≤ 4 Å

(3-endo)-8-benzyl-8-azabicyclo[3.2.1]octan-3-olR9V

+ 2 additives (Dimethyl sulfoxide, DI(HYDROXYETHYL)ETHER)

Dimethyl sulfoxideDMS
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 7LDX RCSB PDB: 7LDX PDBe: 7LDX UniProt: P0DTD1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.