ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6lsmB1 - ECOD Domain | ECOD

ECOD/Domains/e6lsmB1

e6lsmB1

UID: 002709462

PDB

Range: B:2-245
PDB: 6LSM chain B(all domains)
UniProt: P02554 (all domains)

Molecule: Tubulin beta chain

3D Structure

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Related Domains

Browse other domains in Tubulin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupTubulin nucleotide-binding domain-like(2003.1.6)

FFamilyTubulin(2003.1.6.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Calcium ionCA
metal
2-(4-methylphenyl)-7-(3,4,5-trimethoxyphenyl)pyrazolo[1,5-a]pyrimidine

Pfam Families

PF00091Tubulin

Tubulin/FtsZ family, GTPase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6LSM RCSB PDB: 6LSM PDBe: 6LSM UniProt: P02554

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

+ 1 additive (2-(N-MORPHOLINO)-ETHANESULFONIC ACID)

2-(N-MORPHOLINO)-ETHANESULFONIC ACIDMES

Shown in the structure viewer. Drug annotations from DrugDomain.