ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p24D5 - ECOD Domain | ECOD

ECOD/Domains/e6p24D5

e6p24D5

UID: 002710294

PDB

Range: D:473-688
PDB: 6P24 chain D(all domains)
UniProt: P07395 (all domains)
Gene: pheT

Molecule: Phenylalanine--tRNA ligase beta subunit

3D Structure

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Related Domains

Browse other domains in tRNA_synthFbeta →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA_synthFbeta(314.1.1.11)

Ligands

in contact, ≤ 4 Å

HEXANE-1,6-DIOLHEZ
Magnesium ionMG
metal

+ 3 additives (Tromethamine, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

TromethamineTRS

Pfam Families

PF17759tRNA_synthFbeta

Phenylalanyl tRNA synthetase beta chain CLM domain

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 6P24 RCSB PDB: 6P24 PDBe: 6P24 UniProt: P07395

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.