ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6w9gC1 - ECOD Domain | ECOD

ECOD/Domains/e6w9gC1

e6w9gC1

UID: 002714456

PDB

Range: C:119-261
PDB: 6W9G chain C(all domains)
UniProt: P29965 (all domains)
Gene: CD40LG

Molecule: CD40 ligand

3D Structure

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Related Domains

Browse other domains in TNF →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupTNF-like(10.3)

TT-groupTNF-like(10.3.1)

FFamilyTNF(10.3.1.1)

Ligands

in contact, ≤ 4 Å

trimethylamine oxideTMO

+ 3 additives (Tromethamine, Pentaethylene glycol, DI(HYDROXYETHYL)ETHER)

TromethamineTRS
DrugBank DB03754
Pentaethylene glycol1PE

Pfam Families

TNF(Tumour Necrosis Factor) family

ClanCL0100C1q_TNF

External Links

ECOD PDB View: 6W9G RCSB PDB: 6W9G PDBe: 6W9G UniProt: P29965

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.