ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ymqD0001 - ECOD Domain | ECOD

ECOD/Domains/e6ymqD0001

e6ymqD0001

UID: 002718338

PDB

Range: D000:20-131
PDB: 6YMQ chain D000(all domains)
UniProt: Q9NZC2 (all domains)
Gene: TREM2

Molecule: Triggering receptor expressed on myeloid cells 2

3D Structure

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Related Domains

Browse other domains in V-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyV-set(11.1.1.99)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Immunoglobulin V-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 6YMQ RCSB PDB: 6YMQ PDBe: 6YMQ UniProt: Q9NZC2

Downloads

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