ECODEvolutionary Classification of Protein Domains

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PDB 6YMQ

X-RAY DIFFRACTION3.07 Å12 chains18 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ASingle-chain variable 4view chain

2 domains

e6ymqA1(A:3-138)e6ymqA2(A:139-245)

Chain BSingle-chain variable 4view chain

2 domains

e6ymqB1(B:3-138)e6ymqB2(B:139-245)

Chain CSingle-chain variable 4view chain

2 domains

e6ymqC1(C:139-244)e6ymqC2(C:3-138)

Chain DSingle-chain variable 4view chain

2 domains

e6ymqD1(D:2-138)e6ymqD2(D:139-244)

Chain D000Triggering receptor expressed on myeloid cells 2view chain

1 domain

e6ymqD0001(D000:20-131)

Chain ESingle-chain variable 4view chain

2 domains

e6ymqE1(E:139-245)e6ymqE2(E:2-138)

Chain FSingle-chain variable 4view chain

2 domains

e6ymqF1(F:3-138)e6ymqF2(F:139-245)

Chain GTriggering receptor expressed on myeloid cells 2view chain

1 domain

e6ymqG1(G:19-131)

Chain HTriggering receptor expressed on myeloid cells 2view chain

1 domain

e6ymqH1(H:20-131)

Chain ITriggering receptor expressed on myeloid cells 2view chain

1 domain

e6ymqI1(I:19-131)

Chain JTriggering receptor expressed on myeloid cells 2view chain

1 domain

e6ymqJ1(J:20-131)

Chain KTriggering receptor expressed on myeloid cells 2view chain

1 domain

e6ymqK1(K:19-130)

All Domains (18)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6ymqA1	A:3-138	V-set	11 → 11.1 → 11.1.1
2	A	e6ymqA2	A:139-245	V-set	11 → 11.1 → 11.1.1
3	B	e6ymqB1	B:3-138	V-set	11 → 11.1 → 11.1.1
4	B	e6ymqB2	B:139-245	V-set	11 → 11.1 → 11.1.1
5	C	e6ymqC1	C:139-244	V-set	11 → 11.1 → 11.1.1
6	C	e6ymqC2	C:3-138	V-set	11 → 11.1 → 11.1.1
7	D	e6ymqD1	D:2-138	V-set	11 → 11.1 → 11.1.1
8	D	e6ymqD2	D:139-244	V-set	11 → 11.1 → 11.1.1
9	D000	e6ymqD0001	D000:20-131	V-set	11 → 11.1 → 11.1.1
10	E	e6ymqE1	E:139-245	V-set	11 → 11.1 → 11.1.1
11	E	e6ymqE2	E:2-138	V-set	11 → 11.1 → 11.1.1
12	F	e6ymqF1	F:3-138	V-set	11 → 11.1 → 11.1.1
13	F	e6ymqF2	F:139-245	V-set	11 → 11.1 → 11.1.1
14	G	e6ymqG1	G:19-131	V-set	11 → 11.1 → 11.1.1
15	H	e6ymqH1	H:20-131	V-set	11 → 11.1 → 11.1.1
16	I	e6ymqI1	I:19-131	V-set	11 → 11.1 → 11.1.1
17	J	e6ymqJ1	J:20-131	V-set	11 → 11.1 → 11.1.1
18	K	e6ymqK1	K:19-130	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors