ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6z5rO1 - ECOD Domain | ECOD

ECOD/Domains/e6z5rO1

e6z5rO1

UID: 002719074

PDB

Range: O:5-52
PDB: 6Z5R chain O(all domains)
UniProt: Q6N9L5 (all domains)
Gene: pufB

Molecule: Light-harvesting complex 1 beta chain

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE6PL
Spirilloxanthin

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 6Z5R RCSB PDB: 6Z5R PDBe: 6Z5R UniProt: Q6N9L5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.