ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e7nhpD1 - ECOD Domain | ECOD

ECOD/Domains/e7nhpD1

e7nhpD1

UID: 002733853

PDB

Range: D:12-352
PDB: 7NHP chain D(all domains)
UniProt: Q8CM25 (all domains)
Gene: psbD1

Molecule: Photosystem II D2 protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
1,2-Dipalmitoyl-Phosphatidyl-Glycerole

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 7NHP RCSB PDB: 7NHP PDBe: 7NHP UniProt: Q8CM25

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB02043

FE (III) IONFE

metal

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Pheophytin aPHO

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

Chloride ionCL

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.