ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yx8DDD1 - ECOD Domain | ECOD

ECOD/Domains/e6yx8DDD1

e6yx8DDD1

UID: 002768404

PDB

Range: DDD:1-161
PDB: 6YX8 chain DDD(all domains)

Molecule: BETA SUBUNIT OF CYANOBACTERIAL ALLOPHYCOCYANIN PROTEIN

3D Structure

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Related Domains

Browse other domains in Phycobilisome →

Classification

AArchitecturealpha arrays(a.6)

XX-groupGlobin-like(106)

HH-groupGlobin-like(106.1)

TT-groupGlobin-like(106.1.1)

FFamilyPhycobilisome(106.1.1.2)

Ligands

in contact, ≤ 4 Å

BicineBCN
drugDrugBank DB03709
3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(~{Z})-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acidPXQ

Pfam Families

PF00502Phycobilisome

Phycobilisome protein

ClanCL0090Globin

External Links

ECOD PDB View: 6YX8 RCSB PDB: 6YX8 PDBe: 6YX8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 4 additives ((4r)-2-Methylpentane-2,4-Diol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, …)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.