ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6zk3C1 - ECOD Domain | ECOD

ECOD/Domains/e6zk3C1

e6zk3C1

UID: 002828239

PDB

Range: C:8-325
PDB: 6ZK3 chain C(all domains)

Molecule: Pyrimidine-specific ribonucleoside hydrolase rihA

3D Structure

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Related Domains

Browse other domains in IU_nuc_hydro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleoside hydrolase(7517)

HH-groupNucleoside hydrolase(7517.1)

TT-groupNucleoside hydrolase(7517.1.1)

FFamilyIU_nuc_hydro(7517.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
alpha-D-ribofuranoseRIB

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Triethylene glycolPGE

Pfam Families

PF01156IU_nuc_hydro

Inosine-uridine preferring nucleoside hydrolase

ClanCL0727Nucleosidase

External Links

ECOD PDB View: 6ZK3 RCSB PDB: 6ZK3 PDBe: 6ZK3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02327

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.