ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dakA1 - ECOD Domain | ECOD

ECOD/Domains/e8dakA1

e8dakA1

UID: 002877197

PDB

Range: A:0-177
PDB: 8DAK chain A(all domains)

Molecule: GDP-D-glycero-4-keto-d-lyxo-heptose-3-epimerase

3D Structure

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Related Domains

Browse other domains in dTDP_sugar_isom →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilydTDP_sugar_isom(10.12.1.4)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
TetramethylammoniumTMA
drugDrugBank DB03095

Pfam Families

PF00908dTDP_sugar_isom

dTDP-4-dehydrorhamnose 3,5-epimerase

ClanCL0029Cupin

External Links

ECOD PDB View: 8DAK RCSB PDB: 8DAK PDBe: 8DAK

Downloads

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Chloride ion

Shown in the structure viewer. Drug annotations from DrugDomain.