ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7rpaA1 - ECOD Domain | ECOD

ECOD/Domains/e7rpaA1

e7rpaA1

UID: 002885675

PDB

Range: A:31-76,A:174-275
PDB: 7RPA chain A(all domains)

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acidMER

+ 2 additives (Bicarbonate ion, DI(HYDROXYETHYL)ETHER)

Bicarbonate ionBCT
DI(HYDROXYETHYL)ETHER

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 7RPA RCSB PDB: 7RPA PDBe: 7RPA

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.