ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7a9gAAA1 - ECOD Domain | ECOD

ECOD/Domains/e7a9gAAA1

e7a9gAAA1

UID: 002906579

PDB

Range: AAA:27-202,AAA:225-277
PDB: 7A9G chain AAA(all domains)

Molecule: 1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase

3D Structure

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Related Domains

Browse other domains in DXP_synthase_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyDXP_synthase_N(7574.1.1.11)

Ligands

in contact, ≤ 4 Å

2-Acetyl-3-[(4-Amino-2-Methyl-5-Pyrimidinyl)Methyl]-4-Methyl-5-(4,6,6-Trihydroxy-3,5-Dioxa-4,6-Diphosphahex-1-Yl)Thiazolium Inner Salt P,P'-DioxideHTL
drugDrugBank DB02410
Magnesium ionMG
metal

Pfam Families

PF13292DXP_synthase_N

1-deoxy-D-xylulose-5-phosphate synthase

ClanCL0254THDP-binding

External Links

ECOD PDB View: 7A9G RCSB PDB: 7A9G PDBe: 7A9G

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 3 additives (Triethylene glycol, DI(HYDROXYETHYL)ETHER, Tetraethylene glycol)

Triethylene glycolPGE
DrugBank DB02327
DI(HYDROXYETHYL)ETHERPEG
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.