ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7b6sAAA1 - ECOD Domain | ECOD

ECOD/Domains/e7b6sAAA1

e7b6sAAA1

UID: 002969425

PDB

Range: AAA:22-290
PDB: 7B6S chain AAA(all domains)

Molecule: Capsid protein VP1

3D Structure

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Related Domains

Browse other domains in Polyoma_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyPolyoma_coat(10.2.1.6)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, DI(HYDROXYETHYL)ETHER)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Pfam Families

PF00718Polyoma_coat

Polyomavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 7B6S RCSB PDB: 7B6S PDBe: 7B6S

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHER

Shown in the structure viewer. Drug annotations from DrugDomain.