ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8druC2 - ECOD Domain | ECOD

ECOD/Domains/e8druC2

e8druC2

UID: 002969513

PDB

Range: C:1-186
PDB: 8DRU chain C(all domains)

Molecule: Fusion protein of 3C-like proteinase nsp5 and nsp7-nsp8 (C7) cut site

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_C30(1.1.5.19)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Phosphate ion, DI(HYDROXYETHYL)ETHER)

Phosphate ionPO4
DrugBank DB14523
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 8DRU RCSB PDB: 8DRU PDBe: 8DRU

Downloads

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