ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8drwE2 - ECOD Domain | ECOD

ECOD/Domains/e8drwE2

e8drwE2

UID: 002969539

PDB

Range: E:187-306
PDB: 8DRW chain E(all domains)

Molecule: Fusion protein of 3C-like proteinase nsp5 and nsp9-nsp10 (C9) cut site

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001)

HH-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1)

TT-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1.1)

FFamilyPeptidase_C30(6001.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 3 additives (Phosphate ion, Pentaethylene glycol, DI(HYDROXYETHYL)ETHER)

Phosphate ionPO4
DrugBank DB14523
Pentaethylene glycol1PE

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 8DRW RCSB PDB: 8DRW PDBe: 8DRW

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.