ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8drwN2 - ECOD Domain | ECOD

ECOD/Domains/e8drwN2

e8drwN2

UID: 002969557

PDB

Range: N:1-186
PDB: 8DRW chain N(all domains)

Molecule: Fusion protein of 3C-like proteinase nsp5 and nsp9-nsp10 (C9) cut site

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_C30(1.1.5.19)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Pentaethylene glycol, DI(HYDROXYETHYL)ETHER, Phosphate ion)

Pentaethylene glycol1PE
DI(HYDROXYETHYL)ETHERPEG
Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 8DRW RCSB PDB: 8DRW PDBe: 8DRW

Downloads

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