ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7y7qB3 - ECOD Domain | ECOD

ECOD/Domains/e7y7qB3

e7y7qB3

UID: 002974392

PDB

Range: B:793-913,B:1031-1370
PDB: 7Y7Q chain B(all domains)

Molecule: RNA-dependent RNA polymerase

3D Structure

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Related Domains

Browse other domains in RdRP →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupRNAi polymerase helical domain(3588)

HH-groupRNAi polymerase helical domain(3588.1)

TT-groupRNAi polymerase helical domain(3588.1.1)

FFamilyRdRP(3588.1.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Magnesium ionMG
metalwithin 5 Å only

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

Pfam Families

RNA dependent RNA polymerase

External Links

ECOD PDB View: 7Y7Q RCSB PDB: 7Y7Q PDBe: 7Y7Q

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.