ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8a1pD1 - ECOD Domain | ECOD

ECOD/Domains/e8a1pD1

e8a1pD1

UID: 002979107

PDB

Range: D:56-208
PDB: 8A1P chain D(all domains)

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(2S)-tert-butoxy[4-(3,4-dihydro-2H-chromen-6-yl)-2-methylquinolin-3-yl]ethanoic acidLF0
Magnesium ionMG
metal

+ 3 additives (Glycerin, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Glycerin

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 8A1P RCSB PDB: 8A1P PDBe: 8A1P

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.