ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bqgA4 - ECOD Domain | ECOD

ECOD/Domains/e8bqgA4

e8bqgA4

UID: 002984108

PDB

Range: A:841-1005
PDB: 8BQG chain A(all domains)

Molecule: Formate dehydrogenase, alpha subunit, selenocysteine-containing

3D Structure

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Related Domains

Browse other domains in Molydop_binding →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyMolydop_binding(1.1.2.4)

Ligands

in contact, ≤ 4 Å

2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDEMGD
Hydrosulfuric acidH2S
within 5 Å only
Tungsten ionW

Pfam Families

PF01568Molydop_binding

Molydopterin dinucleotide binding domain

ClanCL0199DPBB

External Links

ECOD PDB View: 8BQG RCSB PDB: 8BQG PDBe: 8BQG

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metalwithin 5 Å only

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.