ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8e9eB1 - ECOD Domain | ECOD

ECOD/Domains/e8e9eB1

e8e9eB1

UID: 002988846

PDB

Range: B:17-423
PDB: 8E9E chain B(all domains)

Molecule: Protein farnesyltransferase subunit beta

3D Structure

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Related Domains

Browse other domains in Prenyltrans →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyPrenyltrans(109.2.1.1)

Ligands

in contact, ≤ 4 Å

Farnesyl diphosphateFPP
drugDrugBank DB07780
(5S)-4-({1-[(4-bromophenyl)methyl]-1H-imidazol-5-yl}methyl)-5-butyl-1-[3-(trifluoromethoxy)phenyl]piperazin-2-oneXMY
Zinc ion

Pfam Families

PF00432Prenyltrans

Prenyltransferase alpha-alpha toroid domain

ClanCL00596_Hairpin

External Links

ECOD PDB View: 8E9E RCSB PDB: 8E9E PDBe: 8E9E

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Tromethamine, 1,2-ETHANEDIOL)

TromethamineTRS
DrugBank DB03754
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.