ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ymlQ1 - ECOD Domain | ECOD

ECOD/Domains/e7ymlQ1

e7ymlQ1

UID: 003015478

PDB

Range: Q:1-56
PDB: 7YML chain Q(all domains)

Molecule: Light-harvesting protein B-870 alpha chain

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV
Spheroidene

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 7YML RCSB PDB: 7YML PDBe: 7YML

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Dodecyldimethylamine N-oxide, Dodecyl-beta-d-maltoside)

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.