ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7xjmC1 - ECOD Domain | ECOD

ECOD/Domains/e7xjmC1

e7xjmC1

UID: 003038182

PDB

Range: C:129-252
PDB: 7XJM chain C(all domains)

Molecule: Putrescine-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_8(7523.1.1.28)

Ligands

in contact, ≤ 4 Å

SpermidineSPD
drugDrugBank DB03566
Hexaethylene glycolP6G
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13416SBP_bac_8

Bacterial extracellular solute-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 7XJM RCSB PDB: 7XJM PDBe: 7XJM

Downloads

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