ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8sk0B1 - ECOD Domain | ECOD

ECOD/Domains/e8sk0B1

e8sk0B1

UID: 003060191

PDB

Range: B:-5-324
PDB: 8SK0 chain B(all domains)

Molecule: dTDP-glucose 4,6-dehydratase

3D Structure

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Related Domains

Browse other domains in GDP_Man_Dehyd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyGDP_Man_Dehyd(2003.1.1.72)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128

+ 2 additives (Citrate anion, DI(HYDROXYETHYL)ETHER)

Citrate anionFLC
DI(HYDROXYETHYL)ETHER

Pfam Families

PF16363GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 8SK0 RCSB PDB: 8SK0 PDBe: 8SK0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.