ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8ppkJ1 - ECOD Domain | ECOD

ECOD/Domains/e8ppkJ1

e8ppkJ1

UID: 003064042

PDB

Range: J:2-181
PDB: 8PPK chain J(all domains)

Molecule: 40S ribosomal protein S9

3D Structure

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Related Domains

Browse other domains in Ribosomal_S4,S4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupAlpha-L RNA-binding motif(221.1.2)

FFamilyRibosomal_S4,S4(221.1.2.1)

Ligands

in contact, ≤ 4 Å

Unknown atom or ionUNX

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00163Ribosomal_S4

Ribosomal protein S4/S9 N-terminal domain

ClanCL0492S4

S4 domain

ClanCL0492S4

External Links

ECOD PDB View: 8PPK RCSB PDB: 8PPK PDBe: 8PPK

Downloads

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