ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6y4lA1 - ECOD Domain | ECOD

ECOD/Domains/e6y4lA1

e6y4lA1

UID: 003065360

RepresentativePDB

Range: A:11-281
PDB: 6Y4L chain A(all domains)

Molecule: ER membrane protein complex subunit 2

3D Structure

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Related Domains

Browse other domains in TPR_EMC2 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyTPR_EMC2(109.4.1.297)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Sulfate ion, 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, …)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL

Pfam Families

PF22890TPR_EMC2

EMC2 TPR-like repeat domain

ClanCL0020TPR

External Links

ECOD PDB View: 6Y4L RCSB PDB: 6Y4L PDBe: 6Y4L

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.