ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8bd3v1 - ECOD Domain | ECOD

ECOD/Domains/e8bd3v1

e8bd3v1

UID: 003068469

PDB

Range: v:2-33
PDB: 8BD3 chain v(all domains)

Molecule: Photosystem II reaction center protein Ycf12

3D Structure

Loading viewer...

Related Domains

Browse other domains in PSII_Ycf12 →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein ycf12(3379)

HH-groupPhotosystem II reaction center protein ycf12(3379.1)

TT-groupPhotosystem II reaction center protein ycf12(3379.1.1)

FFamilyPSII_Ycf12(3379.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG
drugDrugBank DB02043

Pfam Families

PF05969PSII_Ycf12

Photosystem II complex subunit Ycf12

External Links

ECOD PDB View: 8BD3 RCSB PDB: 8BD3 PDBe: 8BD3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chlorophyll aCLA

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Shown in the structure viewer. Drug annotations from DrugDomain.