ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8cbtC1 - ECOD Domain | ECOD

ECOD/Domains/e8cbtC1

e8cbtC1

UID: 003071584

PDB

Range: C:222-273
PDB: 8CBT chain C(all domains)

Molecule: Integrase

3D Structure

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Related Domains

Browse other domains in IN_DBD_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyIN_DBD_C(4.1.1.8)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(2~{S})-2-[3-cyclopropyl-2-(3,4-dihydro-2~{H}-chromen-6-yl)-6-methyl-phenyl]-2-cyclopropyloxy-ethanoic acidW2Q

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

1,2-ETHANEDIOLEDO

Pfam Families

PF00552IN_DBD_C

Integrase DNA binding domain

ClanCL0010SH3

External Links

ECOD PDB View: 8CBT RCSB PDB: 8CBT PDBe: 8CBT

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.