ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8ss6C2 - ECOD Domain | ECOD

ECOD/Domains/e8ss6C2

e8ss6C2

UID: 003105269

PDB

Range: C:512-543,C:569-826
PDB: 8SS6 chain C(all domains)

Molecule: Glutamate receptor 2, Voltage-dependent calcium channel gamma-5 subunit chimera

3D Structure

Loading viewer...

Related Domains

Browse other domains in Lig_chan →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupVoltage-gated ion channels(5054)

HH-groupVoltage-gated ion channels(5054.1)

TT-groupVoltage-gated ion channels(5054.1.1)

FFamilyLig_chan(5054.1.1.1)

Ligands

in contact, ≤ 4 Å

Perampanel6ZP
drugDrugBank DB08883
CholesterolCLR
drugDrugBank DB04540
(Z,Z)-4-Hydroxy-N,N,N-Trimethyl-10-Oxo-7-[(1-Oxo-9-Octadecenyl)Oxy]-3,5,9-Trioxa-4-Phosphaheptacos-18-En-1-Aminium-4-Oxide

Pfam Families

PF00060Lig_chan

Ligand-gated ion channel

ClanCL0030Ion_channel

External Links

ECOD PDB View: 8SS6 RCSB PDB: 8SS6 PDBe: 8SS6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03690

SpermidineSPD

drugDrugBank DB03566

FanapanelZK1

drugDrugBank DB12393

Sodium ionNA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.